Search results for " Drosophila melanogaster"

showing 10 items of 20 documents

Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA…

2020

Genetic variation is the fuel of evolution, with standing genetic variation especially important for short-term evolution and local adaptation. To date, studies of spatiotemporal patterns of genetic variation in natural populations have been challenging, as comprehensive sampling is logistically difficult, and sequencing of entire populations costly. Here, we address these issues using a collaborative approach, sequencing 48 pooled population samples from 32 locations, and perform the first continent-wide genomic analysis of genetic variation in European Drosophila melanogaster. Our analyses uncover longitudinal population structure, provide evidence for continent-wide selective sweeps, ide…

0106 biological sciencesMaleincipient sexual isolationQH301 BiologyAcclimatizationADNGenome Insect01 natural sciencesPopulation genomicsAdaptation; Clines; Demography; Population genomics; Selection; SNPs; Structural variants; Acclimatization; Altitude; Animals; DNA Viruses; Drosophila melanogaster; Europe; Genome Mitochondrial; Haplotypes; Insect Viruses; Male; Phylogeography; Polymorphism Single Nucleotide; Genome Insect; Genomic Structural Variation; Microbiota; Selection GeneticSDG 13 - Climate ActionComputingMilieux_MISCELLANEOUSeducation.field_of_study0303 health sciencesAltitude[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]PE&RCgeneettinen muunteluPhylogeographyDrosophila melanogasterLaboratory of GeneticsTransposable elementnorth-americanmahlakärpäsetSettore BIO/18 - GENETICAselectionLaboratorium voor Erfelijkheidsleeramino-acid polymorphism03 medical and health sciencesGeneticGeneticsAdaptation demographyMicrobiomeAdaptationPolymorphismeducationDrosophilaMolecular BiologySelectionEcology Evolution Behavior and SystematicsDemography[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]DNAchemistryEvolutionary biologyGenome MitochondrialGenomic Structural Variationinversion in(3r)payneAdaptationPopulation genomicsStructural variantsGenètica[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosisadaptation demographyCandidate genenucleotide polymorphismAcademicSubjects/SCI01180chemistry.chemical_compoundMelanogaster2. Zero hungerGenomebiologyMicrobiotaSingle NucleotideClinesclinesMitochondrialEuropepopulaatiogenetiikkatransposable elementsDrosophila melanogasterSNPsnatural-populationspopulation genomicsPopulationnext-generationDrosòfila melanogasterInsect Viruses010603 evolutionary biologyPolymorphism Single NucleotideQH301latitudinal clineGenetic variationAnimalsSelection GeneticSelection (genetic algorithm)DiscoveriesLocal adaptation030304 developmental biologylife-historyAcademicSubjects/SCI01130DNA Virusesstructural variantsDASbiology.organism_classificationHaplotypes13. Climate actionperimä[SDE.BE]Environmental Sciences/Biodiversity and EcologyInsectDNAMolecular Biology and Evolution
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Role of the HIPPO pathway as potential key player in the cross talk between oncology and cardiology.

2021

The HIPPO pathway (HP) is a highly conserved kinase cascade that affects organ size by regulating proliferation, cell survival and differentiation. Discovered in Drosophila melanogaster to early 2000, it immediately opened wide frontiers in the field of research. Over the last years the field of knowledge on HP is quickly expanding and it is thought will offer many answers on complex pathologies. Here, we summarized the results of several studies that have investigated HP signaling both in oncology than in cardiology field, with an overview on future perspectives in cardiology research.

0301 basic medicineOncologymedicine.medical_specialtyCardiologyProtein Serine-Threonine KinasesCardiac regeneration03 medical and health sciences0302 clinical medicineInternal medicinemedicineAnimalsHumansHippo Signaling PathwayCardio oncologyCell survivalCell ProliferationHippo signaling pathwaybiologybusiness.industryHematologybiology.organism_classificationKinase cascade030104 developmental biologyDrosophila melanogasterOncologyCardiology fieldAnimals Cardiac development Cardiac regeneration Cardio-oncology Cardiology Cell Proliferation Drosophila melanogaster HIPPO signaling pathway Humans Protein Serine-Threonine Kinases030220 oncology & carcinogenesisCardiologyDrosophila melanogasterbusinessSignal TransductionCritical reviews in oncology/hematology
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NOseq: amplicon sequencing evaluation method for RNA m6A sites after chemical deamination

2020

Abstract Methods for the detection of m6A by RNA-Seq technologies are increasingly sought after. We here present NOseq, a method to detect m6A residues in defined amplicons by virtue of their resistance to chemical deamination, effected by nitrous acid. Partial deamination in NOseq affects all exocyclic amino groups present in nucleobases and thus also changes sequence information. The method uses a mapping algorithm specifically adapted to the sequence degeneration caused by deamination events. Thus, m6A sites with partial modification levels of ∼50% were detected in defined amplicons, and this threshold can be lowered to ∼10% by combination with m6A immunoprecipitation. NOseq faithfully d…

AdenosineSequence analysisAcademicSubjects/SCI00010Bisulfite sequencingDeaminationAdenosine/analogs & derivatives; Adenosine/analysis; Algorithms; Animals; Chromatography Liquid; Deamination; Drosophila melanogaster/genetics; HEK293 Cells; HeLa Cells; High-Throughput Nucleotide Sequencing/methods; Humans; RNA/chemistry; RNA Long Noncoding/chemistry; RNA Messenger/chemistry; RNA Ribosomal 18S/chemistry; Sequence Alignment; Sequence Analysis RNA/methods; Tandem Mass SpectrometrySequence alignmentComputational biologyBiology010402 general chemistry[SDV.BBM.BM] Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biology01 natural sciencesTranscriptome03 medical and health sciencesNarese/13Tandem Mass Spectrometry[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]GeneticsRNA Ribosomal 18SAnimalsHumansRNA MessengerComputingMilieux_MISCELLANEOUS030304 developmental biology0303 health sciencesSequence Analysis RNARNAHigh-Throughput Nucleotide Sequencing[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biologyAmpliconRibosomal RNA0104 chemical sciencesDrosophila melanogasterHEK293 CellsDeaminationMethods OnlineRNA[SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]RNA Long NoncodingSequence AlignmentAlgorithmsChromatography LiquidHeLa Cells
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A spiking network for body size learning inspired by the fruit fly

2013

The concept of peripersonal space is an interesting research topics for psychologists, neurobiologists and for robotic applications. A living being can learn the representation of its own body to take the correct behavioral decision when interacting with the world. To transfer these important learning mechanisms on bio-robots, simple and efficient solutions can be found in the insect world. In this paper a neural-based model for body-size learning is proposed taking into account the results obtained in experiments with fruit flies. Simulations and experimental results on a roving platform are reported and compared with the biological counterpart.

Artificial neural networkbusiness.industryComputer scienceComputational modelMobile robotBiologically inspired modelsSpace (commercial competition)Body sizeMachine learningcomputer.software_genreDrosophila melanogasterSimple (abstract algebra)Biologically inspired models; Drosophila melanogaster; Computational modelArtificial intelligenceBiomimeticsbusinessRepresentation (mathematics)computer
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Serotoninergic Modulation of Phototactic Variability Underpins a Bet-Hedging Strategy in Drosophila melanogaster

2021

When organisms’ environmental conditions vary unpredictably in time, it can be advantageous for individuals to hedge their phenotypic bets. It has been shown that a bet-hedging strategy possibly underlies the high inter-individual diversity of phototactic choice in Drosophila melanogaster. This study shows that fruit flies from a population living in a boreal and relatively unpredictable climate have more variable variable phototactic biases than fruit flies from a more stable tropical climate, consistent with bet-hedging theory. We experimentally show that phototactic variability of D. melanogaster is regulated by the neurotransmitter serotonin (5-HT), which acts as a suppressor of the var…

Cognitive NeurosciencePopulationZoologyNeurosciences. Biological psychiatry. Neuropsychiatryadaptive strategies ; Drosophila melanogaster ; phototaxis ; serotonin ; variationSerotonergic03 medical and health sciencesBehavioral Neuroscienceadaptive strategies0302 clinical medicineTropical climatePhototaxisMelanogastereducation030304 developmental biologyOriginal Research0303 health scienceseducation.field_of_studybiologyfungibiology.organism_classificationSubarctic climateserotoninNeuropsychology and Physiological PsychologyDrosophila melanogasterphototaxisDrosophila melanogastervariation030217 neurology & neurosurgeryRC321-571Frontiers in Behavioral Neuroscience
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A Fly-Inspired Mushroom Bodies Model for Sensory-Motor Control Through Sequence and Subsequence Learning

2016

Classification and sequence learning are relevant capabilities used by living beings to extract complex information from the environment for behavioral control. The insect world is full of examples where the presentation time of specific stimuli shapes the behavioral response. On the basis of previously developed neural models, inspired by Drosophila melanogaster, a new architecture for classification and sequence learning is here presented under the perspective of the Neural Reuse theory. Classification of relevant input stimuli is performed through resonant neurons, activated by the complex dynamics generated in a lattice of recurrent spiking neurons modeling the insect Mushroom Bodies n…

Computer Networks and CommunicationsComputer scienceDecision MakingModels NeurologicalAction PotentialsContext (language use)Insect mushroom bodies bio-inspired control spiking neurons02 engineering and technologyVariation (game tree)Motor Activitybio-inspired control03 medical and health sciences0302 clinical medicineRewardSubsequence0202 electrical engineering electronic engineering information engineeringAnimalsLearningComputer SimulationMushroom BodiesTRACE (psycholinguistics)NeuronsSequencebio-inspired control; Insect mushroom bodies; learning; neural model; resonant neurons; spiking neurons; Action Potentials; Animals; Computer Simulation; Decision Making; Drosophila melanogaster; Learning; Motor Activity; Mushroom Bodies; Neurons; Perception; Reward; Robotics; Models Neurological; Neural Networks Computerspiking neuronsbusiness.industryRoboticsGeneral MedicineInsect mushroom bodiesComplex dynamicsDrosophila melanogasterMushroom bodiesPerception020201 artificial intelligence & image processingNeural Networks ComputerArtificial intelligenceSequence learningbusiness030217 neurology & neurosurgery
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A Mutation With Major Effects on Drosophila melanogaster Sex Pheromones

2005

0016-6731 (Print) Comparative Study Journal Article Research Support, Non-U.S. Gov't; Sex pheromones are intraspecific chemical signals that are crucial for mate attraction and discrimination. In Drosophila melanogaster, the predominant hydrocarbons on the cuticle of mature female and male flies are radically different and tend to stimulate or inhibit male courtship, respectively. This sexual difference depends largely upon the number of double bonds (one in males and two in females) added by desaturase enzymes. A mutation was caused by a PGal4 transposon inserted in the desat1 gene that codes for the desaturase crucial for setting these double bonds. Homozygous mutant flies produced 70-90%…

Fatty Acid DesaturasesMaleChromatography GasPeriod (gene)Analysis of Variance Animals Chromatography Gas DNA Primers DNA Transposable Elements/genetics Drosophila Proteins/*genetics/metabolism Drosophila melanogaster/enzymology/*genetics Fatty Acid Desaturases/*genetics/metabolism Female Gene Components Hexanes/chemistry Hydrocarbons/chemistry/isolation & purification Male Mutation/*genetics Reverse Transcriptase Polymerase Chain Reaction Sex Attractants/analysis/*biosynthesis Sex Factors Species SpecificityMutation/*geneticsMutantHexanes/chemistryInvestigationsDrosophila Proteins/*genetics/metabolismHydrocarbons/chemistry/isolation & purificationSex FactorsFatty Acid Desaturases/*genetics/metabolismSpecies SpecificityGeneticsDrosophila ProteinsHexanesAnimalsSex Attractants/analysis/*biosynthesis[SDV.NEU] Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]Sex AttractantsAlleleDrosophila melanogaster/enzymology/*geneticsGeneComputingMilieux_MISCELLANEOUSDNA PrimersGeneticsAnalysis of VarianceChromatographybiologyReverse Transcriptase Polymerase Chain Reactionfungibiology.organism_classificationMolecular biologyHydrocarbonsDNA Transposable Elements/geneticsSexual dimorphismDrosophila melanogasterGene ComponentsGas[ SDV.NEU ] Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]Sex pheromoneMutationDNA Transposable ElementsSex AttractantsFemaleDrosophila melanogasterGenetics
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The consequences of regulation of desat1 expression for pheromone emission and detection in Drosophila melanogaster.

2010

AbstractSensory communication depends on the precise matching between the emission and the perception of sex- and species-specific signals; understanding both the coevolutionary process and the genes involved in both production and detection is a major challenge. desat1 determines both aspects of communication—a mutation in desat1 simultaneously alters both sex pheromone emission and perception in Drosophila melanogaster flies. We investigated whether the alteration of pheromonal perception is a consequence of the altered production of pheromones or if the two phenotypes are independently controlled by the same locus. Using several genetic tools, we were able to separately manipulate the tw…

Fatty Acid DesaturasesMaleTranscription Genetic[ SDV.AEN ] Life Sciences [q-bio]/Food and NutritionMESH : Animals Genetically ModifiedMESH : GenotypeMESH: GenotypeAnimals Genetically ModifiedSexual Behavior AnimalMESH : HydrocarbonsMESH: Reverse Transcriptase Polymerase Chain ReactionMESH : Drosophila melanogasterDrosophila ProteinsMESH: AnimalsMESH : FemaleMESH: Sexual Behavior AnimalSex AttractantsGeneticsMESH: Nursing AssessmentMESH : Craniocerebral TraumabiologyMESH : Gene Expression RegulationReverse Transcriptase Polymerase Chain ReactionMESH : Fatty Acid DesaturasesMESH : Reverse Transcriptase Polymerase Chain ReactionMESH: Fatty Acid DesaturasesMESH: Gene Expression RegulationPhenotypeMESH: Intracranial PressureMESH: Sex AttractantsDrosophila melanogasterSex pheromonePheromoneFemaleDrosophila melanogasterMESH : MutationMESH: MutationGenotypeMESH : ComaMESH: Drosophila ProteinsMESH : MaleMESH: Craniocerebral TraumaSensory systemLocus (genetics)InvestigationsMESH: Drosophila melanogasterMESH: Animals Genetically ModifiedMESH: HydrocarbonsMESH: Education Nursing ContinuingGeneticsMESH : Nursing AssessmentAnimalsMESH : Sexual Behavior AnimalGeneMESH: ComaTranscriptional activityMESH : Sex AttractantsMESH: HumansMESH: Transcription GeneticMESH : HumansMESH : Transcription Geneticbiology.organism_classificationMESH : Drosophila ProteinsMESH: MaleHydrocarbonsMESH : Intracranial PressureGene Expression RegulationMutationMESH : AnimalsMESH : Education Nursing ContinuingMESH: Female[SDV.AEN]Life Sciences [q-bio]/Food and Nutrition
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Genetic identification of neurons controlling a sexually dimorphic behaviour

2000

0960-9822 (Print) Journal Article Research Support, Non-U.S. Gov't; In the fruit fly Drosophila melanogaster, locomotor activity is sexually dimorphic: female flies constantly modulate their activity pattern whereas males show a steadier, stereotyped walking pace [1]. Here, we mapped the area of the brain controlling this behavioural dimorphism. Adult male Drosophila expressing a dominant feminising transgene in a small cluster of neurons in the pars intercerebralis exhibited a female-like pattern of locomotor activity. Genetic ablation of these neurons prevented the feminisation of the locomotor activity of transgenic males. The results suggest that this cluster of neurons modulates sex-sp…

MaleMESH: NeuronsCourtshipAnimals Genetically ModifiedSexual Behavior Animal0302 clinical medicineMESH: Saccharomyces cerevisiae ProteinsDrosophila ProteinsNervous System Physiological PhenomenaMESH: AnimalsMESH: Sexual Behavior AnimalDrosophila melanogaster/*physiologymedia_commonNeurons0303 health sciencesFungal proteinSex CharacteristicsbiologyAgricultural and Biological Sciences(all)Nuclear ProteinsAnatomyMESH: Transcription FactorsMotor Activity/*physiologyMESH: Motor ActivityDNA-Binding ProteinsFungal Proteins/geneticsNuclear Proteins/*genetics/physiologyDrosophila melanogasterMESH: Fungal Proteins[SDV.NEU]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]FemaleDrosophila melanogasterGeneral Agricultural and Biological SciencesLocomotionSex characteristicsMESH: Sex CharacteristicsNervous System PhysiologySaccharomyces cerevisiae ProteinsTransgenemedia_common.quotation_subjectRecombinant Fusion ProteinsRecombinant Fusion Proteins/biosynthesisSexual BehaviorMESH: LocomotionTranscription Factors/geneticsGenetically ModifiedMotor ActivityGeneral Biochemistry Genetics and Molecular BiologyMESH: Drosophila melanogasterFungal ProteinsMESH: Animals Genetically Modified03 medical and health sciencesMESH: Recombinant Fusion ProteinsAnimalsDrosophila030304 developmental biologyBiochemistry Genetics and Molecular Biology(all)Animalfungibiology.organism_classificationMESH: MaleSexual dimorphismMale courtship behaviourMESH: Nervous System PhysiologyNeuroscienceMESH: FemaleMESH: Nuclear ProteinsNeurons/*physiology030217 neurology & neurosurgeryTranscription Factors
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Genes involved in sex pheromone discrimination in Drosophila melanogaster and their background-dependent effect.

2012

International audience; Mate choice is based on the comparison of the sensory quality of potential mating partners, and sex pheromones play an important role in this process. In Drosophila melanogaster, contact pheromones differ between male and female in their content and in their effects on male courtship, both inhibitory and stimulatory. To investigate the genetic basis of sex pheromone discrimination, we experimentally selected males showing either a higher or lower ability to discriminate sex pheromones over 20 generations. This experimental selection was carried out in parallel on two different genetic backgrounds: wild-type and desat1 mutant, in which parental males showed high and l…

MaleMESH: Olfactory Perception[ SDV.AEN ] Life Sciences [q-bio]/Food and NutritionMESH : Animals Genetically Modifiedlcsh:MedicineGenes InsectMESH: Genes InsectBreedingMESH : Behavior AnimalMESH: ReproductionCourtshipAnimals Genetically ModifiedSexual Behavior Animal0302 clinical medicineMESH : Drosophila melanogasterMESH: Behavior AnimalMESH : FemaleMESH: AnimalsMatingSex AttractantsMESH: Sexual Behavior Animal10. No inequalitylcsh:Sciencemedia_commonGenetics0303 health sciencesMultidisciplinaryEcologyBehavior AnimalReproductionMESH : Genes InsectAnimal ModelsMESH : ReproductionSensory SystemsDrosophila melanogasterMESH: Sex AttractantsMate choiceSex pheromoneAlimentation et NutritionFemaleDrosophila melanogasterMESH : MutationResearch ArticleMESH: Mutationmedia_common.quotation_subjectMESH : BreedingMESH : MaleMESH: CourtshipContext (language use)MESH: BreedingBiologyMESH: Drosophila melanogasterMESH: Animals Genetically Modified03 medical and health sciencesModel OrganismsSpecies SpecificityMESH : Olfactory PerceptionGeneticsFood and NutritionAnimalsMESH : Species SpecificityMESH: Species SpecificityAlleleMESH : Sexual Behavior AnimalBiology030304 developmental biologyEvolutionary BiologyMESH : Sex AttractantsAnimals;Animals;Genetically Modified;Behavior;Animal;Breeding;Courtship;Drosophila melanogaster;Female;Genes;Insect;Male;Mutation;Olfactory Perception;Reproduction;Sex Attractants;Sexual Behavior;Species SpecificityMESH : Courtshiplcsh:RCourtshipbiology.organism_classificationOlfactory PerceptionMESH: MaleMutationSex Attractantslcsh:QMESH : AnimalsMESH: Female[SDV.AEN]Life Sciences [q-bio]/Food and Nutrition030217 neurology & neurosurgeryNeurosciencePLoS ONE
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